| Protein ZmOrphan186 | |
|---|---|
|
ZmOrphan186 is a protein in the Orphans family.
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| Information | |
| Orphans Name: | ZmOrphan186 |
| Species: | Maize |
| Orphans Family: | Orphans |
| Gene Name(Synonym): | CRR1 |
| Uniprot ID: | C0P2S3 |
| Subgenome: | 1 |
Protein ZmOrphan186
ZmOrphan186 is a protein in the Orphans family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF00072 | |
| Zm00001eb066570_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d001865 | DAPseq |  |
sequence | fimo | position |
| Zm00001d001865 | DAPseq |  |
sequence | fimo | position |
| Zm00001d001865 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d001865 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmOrphan186 is the regulator
Interactions where ZmOrphan186 is the target
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Zm00001eb066570_T001 from maize genome v5
Amino Acid Sequence
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MAAAAAAPASVAPSSPKAAGDNRKTVVSVDASELEKHVLAVDDSSVDRAVIARILRGSRYKVTAVESATRALELLALGLL
PDVSMIITDYWMPGMTGYELLKRVKESAALRGIPVVIMSSENVSTRITRCLEEGAEGFLLKPVRPADVSRLCSRIR
MAAAAAAPASVAPSSPKAAGDNRKTVVSVDASELEKHVLAVDDSSVDRAVIARILRGSRYKVTAVESATRALELLALGLL
PDVSMIITDYWMPGMTGYELLKRVKESAALRGIPVVIMSSENVSTRITRCLEEGAEGFLLKPVRPADVSRLCSRIR
MAAAAAAPASVAPSSPKAAGDNRKTVVSVDASELEKHVLAVDDSSVDRAVIARILRGSRYKVTAVESATRALELLALGLL
PDVSMIITDYWMPGMTGYELLKRVKESAALRGIPVVIMSSENVSTRITRCLEEGAEGFLLKPVRPADVSRLCSRIR
MAAAAAAPASVAPSSPKAAGDNRKTVVSVDASELEKHVLAVDDSSVDRAVIARILRGSRYKVTAVESATRALELLALGLL
PDVSMIITDYWMPGMTGYELLKRVKESAALRGIPVVIMSSENVSTRITRCLEEGAEGFLLKPVRPADVSRLCSRIR
MAAAAAAPASVAPSSPKAAGDNRKTVVSVDASELEKHVLAVDDSSVDRAVIARILRGSRYKVTAVESATRALELLALGLL
PDVSMIITDYWMPGMTGYELLKRVKESAALRGIPVVIMSSENVSTRITRCLEEGAEGFLLKPVRPADVSRLCSRIR
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00072 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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GAGATTTTTGCGAAACGGCGCACCA...
GAGATTTTTGCGAAACGGCGCACCACCTAGAAAGGGCCGCTCGTCGTCAGCATGCAAAAGCGAAGCGGCACCAACACACACACAGACACAGTCAGAGAGAGGATCCGTGGCCCATGCACGCAGATCTCGGCAGAATCCCGAGACGCCAACACCTGACAGGCGTGGACAGCGAGAGGCGAGGCAGATCTCGTCCGCGCGGATCCCCTCTCAGATCTCGCAGGATTTTCCTCGCTATCCGGCCCTGCCGTGCCGTGCCGAGTCTTCCCCCCTTCTGGCCTTCTTCTTCTTTCCACACCTGCGTATATATACACGCCCGCCGCGCCTCCGCCTCCTCGCTGCAGCCTGACTGTCTGTTTTCAGCACCCGCACCACCTGACTGTCTGTTCGCAGCACCCGGACCTGTGTCAATGGCCGCTGCAGCCGCCGCTCCAGCATCTGTGGCGCCGTCCTCGCCCAAGGCCGCCGGCGACAACAGGAAGACGGTGGTGTCCGTGGACGCGTCGGAGCTGGAGAAGCACGTCCTAGCGGTGGACGACAGCTCTGTGGACCGTGCCGTGATCGCCAGGATCCTGCGTGGCTCCAGGTACAAGGTGACCGCCGTGGAGTCAGCGACGCGCGCGCTGGAGCTGCTCGCGCTAGGCCTGCTCCCCGACGTCAGCATGATCATCACCGACTACTGGATGCCCGGGATGACTGGGTACGAGCTGCTCAAACGCGTCAAGGAGTCGGCGGCGCTCAGAGGCATCCCCGTCGTCATCATGTCATCGGAGAACGTGTCCACCCGTATCACCCGCTGCCTGGAGGAGGGCGCCGAGGGCTTCCTCCTCAAGCCCGTCCGCCCCGCCGACGTCTCCCGCCTCTGCAGCCGGATCCGGTGACTGCGTGTGGTGCTATGTTAGGAGCTAGGATCCTCAACCAAAAAAAAAAAGATTCCTCTTCTTTCTTTCTTTCTCTCCTGCTTGGACATAGATCTTCAAACAAGGAGCTAACATTTGGGGGGAGACTTTTTAGCTTTAGGGATCTCAACAAGTTGTTCGGAACGGGGGGGATGGAGCACAGCGTTGGCTGTTCTTTTCTCCATTCCTCTTAATAACATCAGGTGTCAATGTCATGCACGATCTCCTTCCTCTCCATGACCATTTCATCCAGTGACCTCATATGATCCTGCTGCCGAGGATGTCAGTGTAGTAGGTTGTGCGAATCCAATCGGACCAGAGATTGTTATTCCTCTTAGGTCAGCTGTTGTTGTGTAATGCGACTAGTACGGTGG
GRMZM2G040736_T01 from maize genome v3
Amino Acid Sequence
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MAAAAAAPASVAPSSPKAAGDNRKTVVSVDASELEKHVLAVDDSSVDRAVIARILRGSRYKVTAVESATRALELLALGLL
PDVSMIITDYWMPGMTGYELLKRVKESAALRGIPVVIMSSENVSTRITRCLEEGAEGFLLKPVRPADVSRLCSRIR
Nucleotide Sequence
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GCTGCAGCCTGACTGTCTGTTTTCA...
GCTGCAGCCTGACTGTCTGTTTTCAGCACCCGCACCACCTGACTGTCTGTTCGCAGCACCCGGACCTGTGTCAATGGCCGCTGCAGCCGCCGCTCCAGCATCTGTGGCGCCGTCCTCGCCCAAGGCCGCCGGCGACAACAGGAAGACGGTGGTGTCCGTGGACGCGTCGGAGCTGGAGAAGCACGTCCTAGCGGTGGACGACAGCTCTGTGGACCGTGCCGTGATCGCCAGGATCCTGCGTGGCTCCAGGTACAAGGTGACCGCCGTGGAGTCAGCGACGCGCGCGCTGGAGCTGCTCGCGCTAGGCCTGCTCCCCGACGTCAGCATGATCATCACCGACTACTGGATGCCCGGGATGACTGGGTACGAGCTGCTCAAACGCGTCAAGGAGTCGGCGGCGCTCAGAGGCATCCCCGTCGTCATCATGTCATCGGAGAACGTGTCCACCCGTATCACCCGCTGCCTGGAGGAGGGCGCCGAGGGCTTCCTCCTCAAGCCCGTCCGCCCCGCCGACGTCTCCCGCCTCTGCAGCCGGATCCGGTGACTGCGTGTGGTGCTATGTTAGGAGCTAGGATCCTCAACCAAAAAAAAAAAGATTCCTCTTCTTTCTTTCTTTCTCTCCTGCTTGGACATAGATCTTCAAACAAGGAGCTAACATTTGGGGGGAGACTTTTTAGCTTTAGGGATCTCAACAAGTTGTTCGGAACGGGGGGGATGGAGCACAGCGTTGGCTGTTCTTTTCTCCATTCCTCTTAATAACATCAGGTGTCAATGTCATGCACG
Zm00001d001865_T001 from maize genome v4
Amino Acid Sequence
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MAAAAAAPASVAPSSPKAAGDNRKTVVSVDASELEKHVLAVDDSSVDRAVIARILRGSRYKVTAVESATRALELLALGLL
PDVSMIITDYWMPGMTGYELLKRVKESAALRGIPVVIMSSENVSTRITRCLEEGAEGFLLKPVRPADVSRLCSRIR
Nucleotide Sequence
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GCTGCAGCCTGACTGTCTGTTTTCA...
GCTGCAGCCTGACTGTCTGTTTTCAGCACCCGCACCACCTGACTGTCTGTTCGCAGCACCCGGACCTGTGTCAATGGCCGCTGCAGCCGCCGCTCCAGCATCTGTGGCGCCGTCCTCGCCCAAGGCCGCCGGCGACAACAGGAAGACGGTGGTGTCCGTGGACGCGTCGGAGCTGGAGAAGCACGTCCTAGCGGTGGACGACAGCTCTGTGGACCGTGCCGTGATCGCCAGGATCCTGCGTGGCTCCAGGTACAAGGTGACCGCCGTGGAGTCAGCGACGCGCGCGCTGGAGCTGCTCGCGCTAGGCCTGCTCCCCGACGTCAGCATGATCATCACCGACTACTGGATGCCCGGGATGACTGGGTACGAGCTGCTCAAACGCGTCAAGGAGTCGGCGGCGCTCAGAGGCATCCCCGTCGTCATCATGTCATCGGAGAACGTGTCCACCCGTATCACCCGCTGCCTGGAGGAGGGCGCCGAGGGCTTCCTCCTCAAGCCCGTCCGCCCCGCCGACGTCTCCCGCCTCTGCAGCCGGATCCGGTGACTGCGTGTGGTGCTATGTTAGGAGCTAGGATCCTCAACCAAAAAAAAAAAGATTCCTCTTCTTTCTTTCTTTCTCTCCTGCTTGGACATAGATCTTCAAACAAGGAGCTAACATTTGGGGGGAGACTTTTTAGCTTTAGGGATCTCAACAAGTTGTTCGGAACGGGGGGGATGGAGCACAGCGTTGGCTGTTCTTTTCTCCATTCCTCTTAATAACATCAGGTGTCAATGTCATGCACG
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